Publications

For the most comprehensive list, please see our Google Scholar page.

°: Corresponding author, *: Co-first authors, lab members highlighted in bold

Ons M’Saad*, Allison Cairns*, Jonathan Gulcicek, Ravi Kiran Kasula, Jacob Liao, Ilona Kondratiuk, Emma H Bewersdorf, Phylicia Kidd, Hanieh Falahati, Juliana E Gentile, Robert F Niescier, Katherine Watters, Robert C Sterner, Seong-il Lee, Xiaojia Guo, Xinran Liu, Gary Desir, Pietro De Camilli, James E Rothman, Anthony J Koleske, Thomas Biederer, Aaron T Kuan°, Joerg Bewersdorf°. All-optical visualization of specific molecules in the ultrastructural context of brain tissue. Nature Biotechnology (2025). 1-15.

Yujin Bao*, Zach Marin*, Xiongchao Chen, Qiong Liu, Yazgan Tuna, Sylvi Stoller, Florian Schueder, Chuyue Zhang, Suet Yin Sarah Fung, Min Wu, Karla M. Neugebauer, Jonathon Howard, Chi Liu, David Baddeley, Michael Shribak°, Joerg Bewersdorf°. A correlative quantitative phase contrast and fluorescence super-resolution microscope for imaging molecules in their cellular context. bioRxiv 2025.10. 13.682186.

Yuan Tian*, Alexander Sauer*, Mariia Dmitrieva, Hongqing Han, Hannahmariam T Mekbib, Yujin Bao, Xiaojia Guo, Tian-min Chen, Robert Safirstein, Gary Desir, Jens Rittscher°, Joerg Bewersdorf°. Scalable automated segmentation quantifies mitochondrial proteins and morphology at the nanoscale. bioRxiv 2025.07. 28.667278.

Yang Li*, Dong-Ryoung Lee*, Edward S Allgeyer, Lena K Schroeder, Shijie Tu, Joerg Bewersdorf°, Xiang Hao°. Implementation of an adaptive-optics assisted isoSTED nanoscope. bioRxiv 2025.04. 02.645322.

Maohan Su*, Abhijith Radhakrishnan*, You Yan, Yuan Tian, Hong Zheng, Ons M’Saad, Morven Graham, Jeff Coleman, Jean ND Goder, Xinran Liu, Yongdeng Zhang, Joerg Bewersdorf°, James E Rothman°. The golgi rim is a precise tetraplex of golgin proteins that can self-assemble into filamentous bands. bioRxiv 2025.03. 27.645134.

Devin M Fuller, Yumei Wu, Florian Schueder, Burha Rasool, Shanta Nag, Justin L Korfhage, Rolando Garcia-Milian, Katerina D Melnyk, Joerg Bewersdorf, Pietro De Camilli, Thomas J Melia°. ATG2A engages Rab1a and ARFGAP1 positive membranes during autophagosome biogenesis. bioRxiv 2025.03. 24.645038.

Hannahmariam T Mekbib, Lasse Pærgård Andersen, Shuwen Zhang, Jonathan Gulcicek, Yuan Tian, Jack R Ross, Mark D Lessard, Joerg Bewersdorf°. Pan-ASLM: a high-resolution and large-field-of-view light sheet microscope for Expansion Microscopy. bioRxiv 2025.08. 06.668765.

Xiaojia Guo, Rongmin Chen, Christine Shugrue, Fei-Fei Shang, Rolando G Milian, Haley Moller, Pawel Licznerski, Tian-min Chen, Richard Kibbey, Ons M Saad, Yuan Tian, Joerg Bewersdorf, Frank Giordano, Fred S Gorelick, Robert Safirstein, Elizabeth A Jonas°, Gary V Desir°. Renalase activates mitochondrial leak metabolism in response to cellular stress and to repair damage after injury. bioRxiv 2025.08. 19.671117.

Florian Schüder°, Felix Rivera-Molina, Maohan Su, Zach Marin, Phylicia Kidd, James E. Rothman, Derek Toomre, Joerg Bewersdorf°. Unraveling cellular complexity with transient adapters in highly multiplexed super-resolution imaging. Cell (2024), 187(7). 1769-1784.

Lukas A Fuentes*, Zach Marin*, Jonathan Tyson, David Baddeley, Joerg Bewersdorf°. The nanoscale organization of reticulon 4 shapes local endoplasmic reticulum structure in situ. Journal of Cell Biology (2023), 222(10).

Mark E Pownall°, Liyun Miao°, Charles E Vejnar, Ons M’Saad, Alice Sherrard, Megan A Frederick, Maria DJ Benitez, Curtis W Boswell, Kenneth S Zaret, Joerg Bewersdorf, Antonio J Giraldez°. Chromatin expansion microscopy reveals nanoscale organization of transcription and chromatin. Science (2023), 381(6653). 92-100.

Zach Marin, Lukas A Fuentes, Joerg Bewersdorf, David Baddeley°. Extracting nanoscale membrane morphology from single-molecule localizations. Biophysical Journal (2023), 122(15). 3022-3030.

Mary Lou P Bailey*, Susan E Pratt*, Michael Hinrichsen, Yongdeng Zhang, Joerg Bewersdorf, Lynne J Regan, Simon GJ Mochrie°. Uncovering diffusive states of the yeast membrane protein, Pma1, and how labeling method can change diffusive behavior. The European Physical Journal E (2023), 46(6). 1-16.

Vinit Sheth, Xuxin Chen, Evan M Mettenbrink, Wen Yang, Meredith A Jones, Ons M’Saad, Abigail G Thomas, Rylee S Newport, Emmy Francek, Lin Wang, Alex N Frickenstein, Nathan D Donahue, Alyssa Holden, Nathan F Mjema, Dixy E Green, Paul L DeAngelis, Joerg Bewersdorf, Stefan Wilhelm°. Quantifying Intracellular Nanoparticle Distributions with Three-Dimensional Super-Resolution Microscopy. ACS Nano (2023), 17(9). 8376-8392.

Andrew ES Barentine, Yu Lin, Edward M Courvan, Phylicia Kidd, Miao Liu, Leonhard Balduf, Timy Phan, Felix Rivera-Molina, Michael R Grace, Zach Marin, Mark Lessard, Juliana Rios Chen, Siyuan Wang, Karla M Neugebauer, Joerg Bewersdorf°, David Baddeley°. An integrated platform for high-throughput nanoscopy. Nature Biotechnology (2023), 41. 1-8.

Florian Schueder, Joerg Bewersdorf°. Omics goes spatial epigenomics. Cell (2022), 185(23). 4253-4255.

Kenny KH Chung, Zhao Zhang, Phylicia Kidd, Yongdeng Zhang, Nathan D Williams, Bennett Rollins, Yang Yang, Chenxiang Lin, David Baddeley, Joerg Bewersdorf°. Fluorogenic DNA-PAINT for faster, low-background super-resolution imaging. Nature Methods (2022), 19(5). 554-559.

Zach Marin, Michael Graff, Andrew ES Barentine, Christian Soeller, Kenny KH Chung, Lukas A Fuentes, David Baddeley°. PYMEVisualize: an open-source tool for exploring 3D super-resolution data. Nature Methods (2021), 18(6). 582–584.

Zach Marin, Lukas A Fuentes, Joerg Bewersdorf, David Baddeley. Extracting Organelle Membrane Topology from Super-Resolution Microscopy Data. Biophysical Journal (2021), 120(3). Supplement 1, 279A.